General

I suggest you ...

You've used all your votes and won't be able to post a new idea, but you can still search and comment on existing ideas.

There are two ways to get more votes:

  • When an admin closes an idea you've voted on, you'll get your votes back from that idea.
  • You can remove your votes from an open idea you support.
  • To see ideas you have already voted on, select the "My feedback" filter and select "My open ideas".
(thinking…)

Enter your idea and we'll search to see if someone has already suggested it.

If a similar idea already exists, you can support and comment on it.

If it doesn't exist, you can post your idea so others can support it.

Enter your idea and we'll search to see if someone has already suggested it.

  1. Parallell simulations on GPU with RoadRunner (CUDA architecture)

    It would be amazing to have support for parallelized simulations of RoadRunner on GPU, namely CUDA
    http://docs.nvidia.com/cuda/cuda-c-programming-guide/#axzz3J8Gr6tok
    I often have to solve the same SBML for different conditions/parameters (Monte-Carlo simulations). It would be nice if this could be run with RoadRunner on a GPU with CUDA architecture.

    There is already some python interface to the cuda architecture which could be used (pyCUDA).
    http://mathema.tician.de/software/pycuda/

    For LSODA some basic implementation was done, but for CVODE nothing is available.
    (Bioinformatics. 2011 Mar 15;27(6):874-6. doi: 10.1093/bioinformatics/btr015. Epub 2011 Jan 11.
    GPU accelerated biochemical network simulation.
    Zhou Y1, Liepe J, Sheng X, Stumpf MP, Barnes…

    2 votes
    Vote
    Sign in
    Check!
    (thinking…)
    Reset
    or sign in with
    • facebook
    • google
      Password icon
      I agree to the terms of service
      Signed in as (Sign out)
      You have left! (?) (thinking…)
      1 comment  ·  Admin →
    • getSBML() function should be able to return Level 2 and Level 3 SBML

      Currently getSBML() only returns Level 3, an option would be added so that it can return Level 2 as well.

      1 vote
      Vote
      Sign in
      Check!
      (thinking…)
      Reset
      or sign in with
      • facebook
      • google
        Password icon
        I agree to the terms of service
        Signed in as (Sign out)
        You have left! (?) (thinking…)
      • roadrunner should provide access to the K matrix

        As far as I can tell from the documentation, one can get the L matrix. I'm also interested in the K matrix.

        1 vote
        Vote
        Sign in
        Check!
        (thinking…)
        Reset
        or sign in with
        • facebook
        • google
          Password icon
          I agree to the terms of service
          Signed in as (Sign out)
          You have left! (?) (thinking…)
        • roadrunner should have a built in mp3 player

          It should have a built in mp3 player for people who don't have mp3 players. You should be able to do r.play("myfile.mp3")

          1 vote
          Vote
          Sign in
          Check!
          (thinking…)
          Reset
          or sign in with
          • facebook
          • google
            Password icon
            I agree to the terms of service
            Signed in as (Sign out)
            You have left! (?) (thinking…)
          • Seed this forum with your ideas

            UserVoice pro tip #1:
            Your customers are full of ideas, but people are more likely to contribute if they're not among the first. Add your own ideas now!

            3 votes
            Vote
            Sign in
            Check!
            (thinking…)
            Reset
            or sign in with
            • facebook
            • google
              Password icon
              I agree to the terms of service
              Signed in as (Sign out)
              You have left! (?) (thinking…)
            • Don't see your idea?

            General

            Feedback and Knowledge Base